The Great Primary Key Debate for Modern Web Applications
Lukas Schneider
DevOps Engineer · Leapcell

Introduction
In the ever-evolving landscape of modern web application development, one fundamental decision often sparks considerable debate among architects and developers: the choice of primary key strategy. This seemingly simple choice—to use a Universally Unique Identifier (UUID), a large integer (BIGINT), or a meaningful natural key like an email address—can profoundly impact an application's scalability, performance, data integrity, and even team workflow. As applications grow in complexity, scale across distributed systems, and demand robust data models, understanding the nuances of each approach becomes critical. This article delves into the heart of this discussion, dissecting the merits and drawbacks of UUIDs, BIGINTs, and natural keys, to guide developers toward making informed decisions for their modern web projects.
Core Terminologies
Before we dive into the comparative analysis, let's establish a clear understanding of the core terms central to this discussion:
- Primary Key (PK): A column or a set of columns in a database table that uniquely identifies each row in that table. Primary keys enforce entity integrity and are crucial for establishing relationships between tables.
 - UUID (Universally Unique Identifier): A 128-bit number used to uniquely identify information in computer systems. UUIDs are generated without a central authority, making collisions highly improbable. They are often represented as a 36-character hexadecimal string, e.g., 
a1b2c3d4-e5f6-7890-1234-567890abcdef. - BIGINT: A data type representing a large integer, typically 64-bit. In the context of primary keys, BIGINTs are often auto-incrementing, meaning the database automatically assigns a sequential, unique number to each new record.
 - Natural Key: A primary key formed using one or more existing attributes that are intrinsically part of the entity and describe it uniquely. Examples include an email address for a user, an ISBN for a book, or a social security number.
 - Surrogate Key: An artificial, system-generated primary key that has no meaning outside the database itself. UUIDs and auto-incrementing BIGINTs are common examples of surrogate keys.
 - Distributed Systems: Systems where components are located on different networked computers, which communicate and coordinate their actions by passing messages. This environment often poses challenges for maintaining uniqueness and consistency.
 - Index Fragmentation: The physical storage of data on disk becoming disorganized over time, leading to slower data retrieval. This can occur when rows are inserted, updated, or deleted, especially with non-sequential primary keys.
 
The Battle of Primary Keys
Let's explore each primary key strategy in detail, examining their principles, implementations, and ideal use cases.
Auto-incrementing BIGINTs
Principle: BIGINTs are typically sequential, auto-incrementing integers. Each new record is assigned the next available number. This is the most traditional and often simplest approach.
Implementation:
CREATE TABLE users ( id BIGINT AUTO_INCREMENT PRIMARY KEY, username VARCHAR(255) NOT NULL UNIQUE, email VARCHAR(255) NOT NULL UNIQUE, created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP );
Pros:
- Compact Storage: BIGINTs (8 bytes) are smaller than UUIDs (16 bytes), leading to less storage overhead and potentially more records fitting into cache.
 - Excellent Performance for B-Tree Indexes: Sequential inserts optimize B-tree index performance by appending new data to the end, minimizing page splits and fragmentation. This leads to fast lookups and efficient use of cache.
 - Readability: Simple, sequential numbers are easy for humans to read, debug, and reference.
 - Natural Ordering: Data can be naturally ordered by insertion time based on the ID.
 
Cons:
- Scalability Challenges (Distributed Systems): Generating unique, sequential IDs across multiple, independent database instances in a distributed system is complex. It often requires centralized ID generation services (e.g., Snowflake, Twitter's ID generator) which can introduce a single point of failure or latency.
 - Predictability/Security Concerns: Knowing the sequence of IDs can allow attackers to guess or iterate through records. While not a primary security measure, it's a consideration.
 - Data Migration Issues: Merging data from different databases using auto-incrementing IDs can lead to ID collisions, requiring complex mapping or re-generation.
 - Vendor Lock-in (Implicit): While not strict vendor lock-in, the specific 
AUTO_INCREMENTsyntax can vary slightly between databases. 
Use Case: Ideal for monolithic applications or systems where a single, central database handles ID generation, or where distributed ID generation is explicitly managed through external services. Excellent for high-volume insert scenarios where sequential writes are beneficial.
UUIDs
Principle: UUIDs are 128-bit numbers designed to be globally unique. Various versions exist (v1, v4, v7), each with different generation mechanisms. v4 is purely random, v1 incorporates the MAC address and timestamp, and v7 combines timestamp and random bits, offering better database performance than v4.
Implementation:
-- For PostgreSQL (using uuid-ossp extension) CREATE EXTENSION IF NOT EXISTS "uuid-ossp"; CREATE TABLE products ( id UUID DEFAULT uuid_generate_v4() PRIMARY KEY, name VARCHAR(255) NOT NULL, description TEXT, price NUMERIC(10, 2), created_at TIMESTAMP DEFAULT CURRENT_TIMESTAMP ); -- For MySQL (UUID() function or application-generated) CREATE TABLE orders ( id BINARY(16) DEFAULT (UUID_TO_BIN(UUID(), 1)) PRIMARY KEY, -- Store as BINARY(16) for efficiency user_id UUID, total_amount NUMERIC(10, 2), order_date TIMESTAMP DEFAULT CURRENT_TIMESTAMP );
Pros:
- Global Uniqueness: Guarantees uniqueness across all databases, servers, and even geographical locations without coordination. This is a significant advantage in distributed or microservices architectures.
 - Scalability (Distributed Systems): IDs can be generated independently by any service or database instance without conflicts, making them perfect for multi-master, multi-tenant, or federated database setups.
 - Client-Side Generation: IDs can be generated at the client or application layer before saving to the database, simplifying offline data entry or optimistic locking strategies.
 - Security by Obscurity: UUIDs are difficult to guess or enumerate, adding a minor layer of obscurity.
 - Easy Data Merging: Datasets from different sources can be combined without ID conflicts.
 
Cons:
- Storage Overhead: UUIDs are 16 bytes, double the size of BIGINTs, leading to larger indexes and data sizes.
 - B-Tree Index Fragmentation (Random UUIDs): Random UUIDs (like v4) lead to non-sequential inserts. This causes frequent page splits and rebalancing in B-tree indexes, resulting in significant index fragmentation, increased I/O, and slower write/read performance over time. This is less an issue with time-ordered IDs like UUID v1 or v7.
 - Poor Cache Locality: Random UUIDs mean related data might be scattered across disk, hurting cache performance.
 - Less Human-Readable: Long, hexadecimal strings are cumbersome to read, remember, and debug.
 - Join Performance Impact: Larger key sizes can slightly impact join performance, as more data needs to be compared.
 
Use Case: Essential for distributed systems, microservices architectures, multi-master database replication, or scenarios where IDs need to be generated offline or by independent services. The use of time-ordered UUIDs (e.g., v1, v7, or UUID_TO_BIN(UUID(), 1) in MySQL) is highly recommended to mitigate index fragmentation.
Natural Keys
Principle: A natural key uses an attribute (or set of attributes) that inherently identifies a record, such as an email address for a user or an ISBN for a book.
Implementation:
CREATE TABLE customers ( email VARCHAR(255) PRIMARY KEY, -- Email as the natural key first_name VARCHAR(255), last_name VARCHAR(255), registration_date TIMESTAMP DEFAULT CURRENT_TIMESTAMP ); -- Example with a composite natural key CREATE TABLE course_enrollments ( student_id BIGINT, course_code VARCHAR(10), enrollment_date DATE, PRIMARY KEY (student_id, course_code) );
Pros:
- Business Meaning: Keys are meaningful to users and the business domain.
 - No Redundancy (Potentially): If the natural key is already stored as a unique identifier, using it as a PK avoids creating an extra surrogate key column.
 - Simplicity in Joins: Joins can sometimes be more intuitive if the natural key is directly shared between tables.
 
Cons:
- Mutability Concerns: Natural keys can change (e.g., a user's email address). If a primary key changes, it necessitates cascading updates across all related foreign key tables, which can be computationally expensive and complex to manage, potentially leading to data inconsistencies.
 - Data Integrity Challenges: Natural keys might not always guarantee uniqueness or remain constant over time across all possible scenarios. What seems unique today might not be tomorrow.
 - Storage Overhead: If the natural key is a long string (like an email), it can be larger than a BIGINT, consuming more storage and affecting index performance.
 - Privacy Issues: Natural keys often contain sensitive information (e.g., email address, National ID), which might not be desirable to use as a widely exposed identifier.
 - Complex Composite Keys: Sometimes, a natural key requires multiple columns (composite key) to ensure uniqueness, which complicates foreign key relationships and indexing.
 - Development Overhead: Handling updates to primary keys and ensuring referential integrity across the system adds significant development and maintenance overhead.
 
Use Case: Highly discouraged for most modern web applications, especially for entities that rarely change. It can be considered for truly immutable entities with a naturally unique and stable identifier that is also concise (e.g., country codes, fixed reference data). Surrogate keys are almost always preferred.
Conclusion
The choice of primary key is a foundational decision with far-reaching implications for a modern web application. For most scenarios, auto-incrementing BIGINTs offer excellent performance and simplicity for systems where a centralized ID generation mechanism is feasible. They minimize storage, optimize B-tree indexing, and are human-friendly. However, their Achilles' heel lies in distributed systems where maintaining global uniqueness without coordination becomes a significant challenge.
This is where UUIDs shine. Their global uniqueness, independent generation, and suitability for distributed architectures make them an indispensable choice for microservices, multi-region deployments, and multi-tenanted applications. To mitigate their primary drawback of index fragmentation, developers should prioritize time-ordered UUID versions (e.g., v1, v7, or similar database-specific implementations like MySQL's UUID_TO_BIN(UUID(), 1)) to combine the benefits of global uniqueness with improved database performance.
Natural keys, while conceptually appealing for their business meaning, generally present too many practical challenges related to mutability, integrity, and privacy to be a sustainable choice for primary keys in modern, dynamic web applications. Surrogate keys (BIGINTs or UUIDs) almost always provide a more robust and maintainable foundation.
Ultimately, the deciding factor is the application's specific architecture and scalability requirements. For simple, monolithic applications with a single database, BIGINTs often suffice. For complex, distributed, and highly scalable systems, UUIDs (especially time-ordered variants) offer the necessary flexibility and resilience, making them the preferred weapon in the primary key arsenal.

